PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0236s00150.1
Common NameLR48_Vigan50s007200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 159aa    MW: 17730.3 Da    PI: 10.4311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0236s00150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-202069255
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a++ a++ l+g
  Vang0236s00150.1 20 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDTAARTLRG 69
                      69*******.**********883....5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-282079No hitNo description
PfamPF008471.0E-122069IPR001471AP2/ERF domain
PROSITE profilePS5103222.5242077IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-222078IPR016177DNA-binding domain
SMARTSM003802.0E-352083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-302077IPR001471AP2/ERF domain
PRINTSPR003671.8E-102132IPR001471AP2/ERF domain
PRINTSPR003671.8E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MPAHAPPINK HSPPPPKEVH FRGVRKRPWG RFAAEIRDPW KKTRKWLGTF DTAEEAARAY  60
DTAARTLRGP KAKTNFTYVV APAIFAAPES QAPAHDPLAR PVEFFGLPLF FTTDADSGAP  120
VRSEYKGYKL ENIAGFVVTK EEKKKPFLFD LNQPAPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-191776262ATERF1
3gcc_A3e-191776262ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495614.11e-110PREDICTED: ethylene-responsive transcription factor 3-like
TrEMBLA0A0S3RY571e-111A0A0S3RY57_PHAAN; Uncharacterized protein
TrEMBLA0A0L9T3K71e-111A0A0L9T3K7_PHAAN; Uncharacterized protein
STRINGGLYMA03G31640.25e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.19e-22ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]